Branching points detection in processed image
3
$begingroup$
I want to get the branching coordinates from a computer-generated image like this one:
After SkeletonTransform and Pruning, I get:
I would like to develop an algorithm that automatically detect and give coordinates of branching points (I could do it manually but really time consuming).
Thanks!
Edit: I already tried MorphologicalBranchPoints with poor results...
graphics graphs-and-networks image-processing
asked 12 hours ago
ValacarValacar
461212
$endgroup$
add a comment |
3
$begingroup$
I want to get the branching coordinates from a computer-generated image like this one:
After SkeletonTransform and Pruning, I get:
I would like to develop an algorithm that automatically detect and give coordinates of branching points (I could do it manually but really time consuming).
Thanks!
Edit: I already tried MorphologicalBranchPoints with poor results...
graphics graphs-and-networks image-processing
asked 12 hours ago
ValacarValacar
461212
$endgroup$
1
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result withMorphologicalBranchPointswasn't good then.
$endgroup$
– Valacar
11 hours ago
1
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago
add a comment |
3
3
3
$begingroup$
I want to get the branching coordinates from a computer-generated image like this one:
After SkeletonTransform and Pruning, I get:
I would like to develop an algorithm that automatically detect and give coordinates of branching points (I could do it manually but really time consuming).
Thanks!
Edit: I already tried MorphologicalBranchPoints with poor results...
graphics graphs-and-networks image-processing
asked 12 hours ago
ValacarValacar
461212
$endgroup$
I want to get the branching coordinates from a computer-generated image like this one:
After SkeletonTransform and Pruning, I get:
I would like to develop an algorithm that automatically detect and give coordinates of branching points (I could do it manually but really time consuming).
Thanks!
Edit: I already tried MorphologicalBranchPoints with poor results...
graphics graphs-and-networks image-processing
graphics graphs-and-networks image-processing
asked 12 hours ago
ValacarValacar
461212
asked 12 hours ago
ValacarValacar
461212
edited 12 hours ago
Valacar
asked 12 hours ago
ValacarValacar
461212
asked 12 hours ago
ValacarValacar
461212
asked 12 hours ago
ValacarValacar
461212
461212
1
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result withMorphologicalBranchPointswasn't good then.
$endgroup$
– Valacar
11 hours ago
1
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago
add a comment |
1
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result withMorphologicalBranchPointswasn't good then.
$endgroup$
– Valacar
11 hours ago
1
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago
1
1
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result with
MorphologicalBranchPoints wasn't good then.$endgroup$
– Valacar
11 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result with
MorphologicalBranchPoints wasn't good then.$endgroup$
– Valacar
11 hours ago
1
1
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago
add a comment |
1 Answer
1
active
oldest
votes
8
$begingroup$
Use MorphologicalBranchPoints.
im = Binarize@Import["https://i.stack.imgur.com/O0AMj.png"]
skel = Pruning[Thinning[im], 20];
HighlightImage[skel, MorphologicalBranchPoints[skel]]
Another possibility is to use
skel1 = Pruning[Thinning[im, Method -> "MedialAxis"], 10];
as a start then smoothen the result using
skel2 = Thinning@Dilation[skel1, 5]
so that MorphologicalBranchPoints would not give false results.
HighlightImage[skel2, MorphologicalBranchPoints[skel2]]
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
$endgroup$
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
add a comment |
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
8
$begingroup$
Use MorphologicalBranchPoints.
im = Binarize@Import["https://i.stack.imgur.com/O0AMj.png"]
skel = Pruning[Thinning[im], 20];
HighlightImage[skel, MorphologicalBranchPoints[skel]]
Another possibility is to use
skel1 = Pruning[Thinning[im, Method -> "MedialAxis"], 10];
as a start then smoothen the result using
skel2 = Thinning@Dilation[skel1, 5]
so that MorphologicalBranchPoints would not give false results.
HighlightImage[skel2, MorphologicalBranchPoints[skel2]]
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
$endgroup$
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
add a comment |
8
$begingroup$
Use MorphologicalBranchPoints.
im = Binarize@Import["https://i.stack.imgur.com/O0AMj.png"]
skel = Pruning[Thinning[im], 20];
HighlightImage[skel, MorphologicalBranchPoints[skel]]
Another possibility is to use
skel1 = Pruning[Thinning[im, Method -> "MedialAxis"], 10];
as a start then smoothen the result using
skel2 = Thinning@Dilation[skel1, 5]
so that MorphologicalBranchPoints would not give false results.
HighlightImage[skel2, MorphologicalBranchPoints[skel2]]
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
$endgroup$
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
add a comment |
8
8
8
$begingroup$
Use MorphologicalBranchPoints.
im = Binarize@Import["https://i.stack.imgur.com/O0AMj.png"]
skel = Pruning[Thinning[im], 20];
HighlightImage[skel, MorphologicalBranchPoints[skel]]
Another possibility is to use
skel1 = Pruning[Thinning[im, Method -> "MedialAxis"], 10];
as a start then smoothen the result using
skel2 = Thinning@Dilation[skel1, 5]
so that MorphologicalBranchPoints would not give false results.
HighlightImage[skel2, MorphologicalBranchPoints[skel2]]
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
$endgroup$
Use MorphologicalBranchPoints.
im = Binarize@Import["https://i.stack.imgur.com/O0AMj.png"]
skel = Pruning[Thinning[im], 20];
HighlightImage[skel, MorphologicalBranchPoints[skel]]
Another possibility is to use
skel1 = Pruning[Thinning[im, Method -> "MedialAxis"], 10];
as a start then smoothen the result using
skel2 = Thinning@Dilation[skel1, 5]
so that MorphologicalBranchPoints would not give false results.
HighlightImage[skel2, MorphologicalBranchPoints[skel2]]
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
edited 11 hours ago
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
answered 12 hours ago
SzabolcsSzabolcs
160k14436933
160k14436933
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
add a comment |
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
$begingroup$
Great ! Thanks a lot.
$endgroup$
– Valacar
11 hours ago
add a comment |
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1
$begingroup$
"I already tried MorphologicalBranchPoints with poor results..." Can you be specific about what you got and what you want instead?
$endgroup$
– Szabolcs
12 hours ago
$begingroup$
@ Szabolcs It was more about a careful selection of thinning and skeletonize options. The result with
MorphologicalBranchPointswasn't good then.$endgroup$
– Valacar
11 hours ago
1
$begingroup$
Added another update.
$endgroup$
– Szabolcs
11 hours ago